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    si:dkey-250d21.1 si:dkey-250d21.1 [ Danio rerio (zebrafish) ]

    Gene ID: 402835, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-250d21.1provided by ZNC
    Official Full Name
    si:dkey-250d21.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8276
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-8276
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj64b09; wu:fj64b09
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP12 (THAP domain containing 12). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-250d21.1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (32066330..32083578)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (32122284..32140011)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:ch211-266i6.3 Neighboring gene THAP domain containing 12a Neighboring gene wingless-type MMTV integration site family, member 11 Neighboring gene UV radiation resistance associated gene Neighboring gene DNA ligase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes. Postlethwait JH, et al. Zebrafish, 2019 Oct. PMID 31295059, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC402835; uncharacterized protein si:dkey-250d21.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      32066330..32083578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002663575.7 → XP_002663621.3  uncharacterized protein si:dkey-250d21.1 isoform X1

      UniProtKB/TrEMBL
      A0A8M1RR96
      Conserved Domains (3) summary
      pfam09528
      Location:2107 → 2702
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam05485
      Location:4 → 88
      THAP; THAP domain
      pfam14291
      Location:814 → 908
      DUF4371; Domain of unknown function (DUF4371)

    2. XM_021479400.2 → XP_021335075.1  uncharacterized protein si:dkey-250d21.1 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QL63
      Conserved Domains (5) summary
      pfam05485
      Location:5 → 86
      THAP; THAP domain
      pfam14291
      Location:772 → 908
      DUF4371; Domain of unknown function (DUF4371)
      cl26247
      Location:2235 → 2450
      DNA_pol3_delta2; DNA polymerase III, delta subunit
      cl26761
      Location:2315 → 2665
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      cl28246
      Location:2024 → 2303
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein Strain
    Heading Accession and Version

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