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    zc3h3 zinc finger CCCH-type containing 3 [ Danio rerio (zebrafish) ]

    Gene ID: 561182, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zc3h3provided by ZNC
    Official Full Name
    zinc finger CCCH-type containing 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9399
    See related
    Ensembl:ENSDARG00000090751 AllianceGenome:ZFIN:ZDB-GENE-030131-9399
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj68a07; wu:fj68a07
    Summary
    Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zc3h3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (32717438..32834083, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (32732748..32849403, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495884 Neighboring gene MAF bZIP transcription factor Aa Neighboring gene cylindromatosis (turban tumor syndrome), like Neighboring gene growth hormone releasing hormone receptor b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      32717438..32834083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_684588.6 → XP_689680.3  zinc finger CCCH domain-containing protein 3

      UniProtKB/TrEMBL
      A0A8N7TB21, E7FH07
      Related
      ENSDARP00000105060.1, ENSDART00000129803.4
      Conserved Domains (2) summary
      smart00356
      Location:776 → 802
      ZnF_C3H1; zinc finger
      pfam00642
      Location:699 → 720
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein Strain
    Heading Accession and Version

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