U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    znf622 zinc finger protein 622 [ Danio rerio (zebrafish) ]

    Gene ID: 407703, updated on 9-Dec-2024

    Summary

    Official Symbol
    znf622provided by ZNC
    Official Full Name
    zinc finger protein 622provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050927-1
    See related
    Ensembl:ENSDARG00000014692 AllianceGenome:ZFIN:ZDB-GENE-050927-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Zfp622; znf622l
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is expressed in optic cup and optic tectum. Orthologous to human ZNF622 (zinc finger protein 622). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See znf622 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (41563073..41571454, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (41713733..41722136, complement)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene activin A receptor, type 1 like Neighboring gene D-2-hydroxyglutarate dehydrogenase Neighboring gene zgc:110158 Neighboring gene uncharacterized LOC103910218

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    cytoplasmic 60S subunit biogenesis factor ZNF622; zinc finger protein 622
    Names
    zinc finger protein 622, like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      41563073..41571454 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017352038.3XP_017207527.1  cytoplasmic 60S subunit biogenesis factor ZNF622

      UniProtKB/TrEMBL
      A0A8M6YUA0, F1QU59
      Related
      ENSDARP00000014151.6, ENSDART00000022643.7