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    rrn3 RRN3 homolog, RNA polymerase I transcription factor [ Danio rerio (zebrafish) ]

    Gene ID: 558718, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rrn3provided by ZNC
    Official Full Name
    RRN3 homolog, RNA polymerase I transcription factorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080225-1
    See related
    Ensembl:ENSDARG00000102997 AllianceGenome:ZFIN:ZDB-GENE-080225-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:6893790; si:dkeyp-72e1.8
    Summary
    Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation at RNA polymerase I promoter. Predicted to act upstream of or within translational initiation. Predicted to be active in nucleus. Is expressed in midbrain; segmental plate; and somite. Orthologous to several human genes including RRN3 (RRN3 homolog, RNA polymerase I transcription factor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rrn3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (36589477..36602383, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (36447619..36460813, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene periplakin Neighboring gene si:dkeyp-72e1.9 Neighboring gene si:dkeyp-72e1.6 Neighboring gene pyridoxal-dependent decarboxylase domain containing 1 Neighboring gene MPV17 mitochondrial membrane protein like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA polymerase I core binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase I general transcription initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase I general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase I promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within transcription initiation at RNA polymerase I promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase I-specific transcription initiation factor RRN3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      36589477..36602383 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_701870.7 → XP_706962.2  RNA polymerase I-specific transcription initiation factor RRN3

      See identical proteins and their annotated locations for XP_706962.2

      UniProtKB/TrEMBL
      A0A0R4ICI5, A0A8N7UW46
      Related
      ENSDARP00000131383.1, ENSDART00000165414.2
      Conserved Domains (1) summary
      pfam05327
      Location:23 → 547
      RRN3; RNA polymerase I specific transcription initiation factor RRN3

    2. XM_005164109.5 → XP_005164166.1  RNA polymerase I-specific transcription initiation factor RRN3

      See identical proteins and their annotated locations for XP_005164166.1

      UniProtKB/TrEMBL
      A0A0R4ICI5, A0A8N7UW46
      Related
      ENSDARP00000140362.1, ENSDART00000162396.2
      Conserved Domains (1) summary
      pfam05327
      Location:23 → 547
      RRN3; RNA polymerase I specific transcription initiation factor RRN3
    Nucleotide Protein Strain
    Heading Accession and Version

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