U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    map7d1b MAP7 domain containing 1b [ Danio rerio (zebrafish) ]

    Gene ID: 796270, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    map7d1bprovided by ZNC
    Official Full Name
    MAP7 domain containing 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080215-23
    See related
    Ensembl:ENSDARG00000104701 AllianceGenome:ZFIN:ZDB-GENE-080215-23
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:172238
    Summary
    Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D1 (MAP7 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See map7d1b in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3929084..4010260, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3998258..4079437, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch73-281i18.6 Neighboring gene uncharacterized LOC137488463 Neighboring gene uncharacterized LOC100149327 Neighboring gene sperm-tail PG-rich repeat containing 1 Neighboring gene MYST/Esa1-associated factor 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Disruption of MAP7D1 Gene Function Increases the Risk of Doxorubicin-Induced Cardiomyopathy and Heart Failure. Li LP, et al. Biomed Res Int, 2021. PMID 34327238, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    MAP7 domain-containing protein 1b
    Names
    microtubule-associated protein 7 domain containing 1b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113635.1 → NP_001107107.1  MAP7 domain-containing protein 1b

      See identical proteins and their annotated locations for NP_001107107.1

      Status: PROVISIONAL

      Source sequence(s)
      BC154607
      UniProtKB/TrEMBL
      A0A8M3AJX7, A8WG76
      Related
      ENSDARP00000136935.1, ENSDART00000159605.2
      Conserved Domains (3) summary
      pfam05672
      Location:462 → 615
      MAP7; MAP7 (E-MAP-115) family
      pfam16496
      Location:315 → 381
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      cl20817
      Location:75 → 187
      GBP_C; Guanylate-binding protein, C-terminal domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      3929084..4010260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173747.2 → XP_005173804.1  MAP7 domain-containing protein 1b isoform X2

      UniProtKB/TrEMBL
      A0A8M2BL12, A0A8M3AJX7
      Conserved Domains (3) summary
      pfam05672
      Location:497 → 650
      MAP7; MAP7 (E-MAP-115) family
      pfam16496
      Location:350 → 416
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      cl20817
      Location:75 → 187
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. XM_005173748.2 → XP_005173805.1  MAP7 domain-containing protein 1b isoform X3

      UniProtKB/TrEMBL
      A0A8M2BL37, A0A8M3AJX7
      Conserved Domains (3) summary
      pfam05672
      Location:469 → 622
      MAP7; MAP7 (E-MAP-115) family
      pfam16496
      Location:322 → 388
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      cl20817
      Location:94 → 173
      GBP_C; Guanylate-binding protein, C-terminal domain

    3. XM_005173746.2 → XP_005173803.1  MAP7 domain-containing protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M2BL29, A0A8M3AJX7
      Conserved Domains (3) summary
      pfam05672
      Location:504 → 657
      MAP7; MAP7 (E-MAP-115) family
      pfam16496
      Location:357 → 423
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      cl20817
      Location:94 → 173
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools