nt5c3a 5'-nucleotidase, cytosolic IIIA [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nt5c3aprovided by ZNC
Official Full Name: 5'-nucleotidase, cytosolic IIIAprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-439
See related: Ensembl:ENSDARG00000058597 AllianceGenome:ZFIN:ZDB-GENE-030131-439
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nt5c3; fb30h07; zgc:66117; wu:fb30h07
Summary: Predicted to enable 5'-nucleotidase activity. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be active in cytoplasm. Is expressed in brain; myotome; and yolk syncytial layer. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (7216809..7239464, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (7299463..7321956, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fb30h07 (e-PCR)
- UniSTS:189017

fb30h07.x1 (e-PCR)
- UniSTS:203107

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 5'-nucleotidase activity	IBA Inferred from Biological aspect of Ancestor more info
enables 5'-nucleotidase activity	IEA Inferred from Electronic Annotation more info
enables XMP 5'-nucleosidase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables magnesium ion binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within nucleotide metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cytosolic 5'-nucleotidase 3

Names: 5'-nucleotidase, cytosolic III; cN-III; cytosolic 5'-nucleotidase III

NP_955854.2

EC 3.1.3.5

XP_068069989.1

EC 3.1.3.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.