U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    c1d C1D nuclear receptor corepressor [ Danio rerio (zebrafish) ]

    Gene ID: 474329, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    c1dprovided by ZNC
    Official Full Name
    C1D nuclear receptor corepressorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041024-8
    See related
    Ensembl:ENSDARG00000021112 AllianceGenome:ZFIN:ZDB-GENE-041024-8
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:103509
    Summary
    Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and regulation of gene expression. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human C1D (C1D nuclear receptor corepressor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See c1d in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (4657340..4664327, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (4528754..4535741, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487355 Neighboring gene uncharacterized LOC137487356 Neighboring gene T-box transcription factor Tb Neighboring gene phosphodiesterase 10A Neighboring gene phospholipase A2, group XIIB Neighboring gene oncoprotein induced transcript 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Pharmacokinetics and effects of tetrabromobisphenol a (TBBPA) to early life stages of zebrafish (Danio rerio). Liu H, et al. Chemosphere, 2018 Jan. PMID 28992476
    2. Effects of tris(1,3-dichloro-2-propyl) phosphate and triphenyl phosphate on receptor-associated mRNA expression in zebrafish embryos/larvae. Liu C, et al. Aquat Toxicol, 2013 Mar 15. PMID 23306105
    3. Integrated in silico and in vivo approaches to investigate effects of BDE-99 mediated by the nuclear receptors on developing zebrafish. Zhang L, et al. Environ Toxicol Chem, 2018 Mar. PMID 29027256
    4. Differential modulation of expression of nuclear receptor mediated genes by tris(2-butoxyethyl) phosphate (TBOEP) on early life stages of zebrafish (Danio rerio). Ma Z, et al. Aquat Toxicol, 2015 Dec. PMID 26562049
    5. Bioaccumulation, biotransformation, and toxicity of BDE-47, 6-OH-BDE-47, and 6-MeO-BDE-47 in early life-stages of zebrafish (Danio rerio). Liu H, et al. Environ Sci Technol, 2015 Feb 3. PMID 25565004

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear nucleic acid-binding protein C1D
    Names
    C1D nuclear receptor co-repressor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007059.1 → NP_001007060.1  nuclear nucleic acid-binding protein C1D

      See identical proteins and their annotated locations for NP_001007060.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083407
      UniProtKB/Swiss-Prot
      Q5XJ97
      Related
      ENSDARP00000143735.1, ENSDART00000177957.2
      Conserved Domains (1) summary
      pfam04000
      Location:18 → 95
      Sas10_Utp3; Sas10/Utp3/C1D family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      4657340..4664327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480568.2 → XP_021336243.1  nuclear nucleic acid-binding protein C1D isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q9N9
      Conserved Domains (1) summary
      pfam04000
      Location:18 → 95
      Sas10_Utp3; Sas10/Utp3/C1D family

    2. XM_068212836.1 → XP_068068937.1  nuclear nucleic acid-binding protein C1D isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q9N9
      Related
      ENSDARP00000020042.5, ENSDART00000023803.6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XJ97.1 GenPept UniProtKB/Swiss-Prot:Q5XJ97

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools