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    luc7l LUC7-like (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 415206, updated on 9-Dec-2024

    Summary

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    Official Symbol
    luc7lprovided by ZNC
    Official Full Name
    LUC7-like (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040625-111
    See related
    Ensembl:ENSDARG00000055903 AllianceGenome:ZFIN:ZDB-GENE-040625-111
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:86815; wu:fb51e07; wu:fz47d12; zgc:101760
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site recognition. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L (LUC7 like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See luc7l in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39638549..39654132)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39750704..39766285)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6B1 Neighboring gene family with sequence similarity 234 member A Neighboring gene uncharacterized LOC101885409 Neighboring gene STIP1 homology and U-Box containing protein 1 Neighboring gene Ig lambda-2 chain C region-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Miranda CL, et al. Arch Biochem Biophys, 1993 Sep. PMID 8373170
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative RNA-binding protein Luc7-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002116.1 → NP_001002116.1  putative RNA-binding protein Luc7-like 1

      See identical proteins and their annotated locations for NP_001002116.1

      Status: PROVISIONAL

      Source sequence(s)
      BC071474
      UniProtKB/TrEMBL
      A0A8M3APG0, Q6IQD4
      Related
      ENSDARP00000072775.4, ENSDART00000078313.6
      Conserved Domains (2) summary
      COG5200
      Location:5 → 230
      LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
      pfam03194
      Location:5 → 241
      LUC7; LUC7 N_terminus

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      39638549..39654132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470133.2 → XP_021325808.1  putative RNA-binding protein Luc7-like 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3APG0, A0A8M9P5T9
      Conserved Domains (1) summary
      pfam03194
      Location:1 → 188
      LUC7; LUC7 N_terminus

    2. XM_005162898.4 → XP_005162955.2  putative RNA-binding protein Luc7-like 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BA63, A0A8M3APG0
      Conserved Domains (2) summary
      COG5200
      Location:27 → 233
      LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
      pfam03194
      Location:25 → 244
      LUC7; LUC7 N_terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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