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    hrob homologous recombination factor with OB-fold [ Danio rerio (zebrafish) ]

    Gene ID: 561004, updated on 9-Dec-2024

    Summary

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    Official Symbol
    hrobprovided by ZNC
    Official Full Name
    homologous recombination factor with OB-foldprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5375
    See related
    Ensembl:ENSDARG00000096229 AllianceGenome:ZFIN:ZDB-GENE-030131-5375
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd15b08; wu:fd15b08; si:dkey-260c8.8
    Summary
    Predicted to act upstream of or within recombinational repair. Orthologous to human HROB (homologous recombination factor with OB-fold). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See hrob in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37790403..37806287)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37648387..37664429)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene ribosomal protein S11 Neighboring gene acid-sensing (proton-gated) ion channel 2 Neighboring gene uncharacterized LOC110439297 Neighboring gene uncharacterized LOC137490685

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within recombinational repair IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    homologous recombination OB-fold protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      37790403..37806287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_684402.8 → XP_689494.2  homologous recombination OB-fold protein isoform X1

      UniProtKB/TrEMBL
      A0A8N7TDQ9, I3ISZ9
      Related
      ENSDARP00000126050.1, ENSDART00000151506.2
      Conserved Domains (1) summary
      pfam15072
      Location:414 → 497
      DUF4539; Domain of unknown function (DUF4539)

    2. XM_068219277.1 → XP_068075378.1  homologous recombination OB-fold protein isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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