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    zgc:112982 zgc:112982 [ Danio rerio (zebrafish) ]

    Gene ID: 503771, updated on 4-Jan-2025

    Summary

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    Official Symbol
    zgc:112982provided by ZNC
    Official Full Name
    zgc:112982provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050306-55
    See related
    Ensembl:ENSDARG00000001829 AllianceGenome:ZFIN:ZDB-GENE-050306-55
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb48h12; fb93h01; wu:fb48h12; wu:fb93h01
    Summary
    Orthologous to human BCLAF3 (BCLAF1 and THRAP3 family member 3). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See zgc:112982 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (24101807..24118398, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (23956637..23973237, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489244 Neighboring gene lipase, member Ib Neighboring gene MAP7 domain containing 2b Neighboring gene eukaryotic translation initiation factor 1A X-linked b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC503771

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013349.1 → NP_001013367.1  uncharacterized protein LOC503771 isoform 2

      See identical proteins and their annotated locations for NP_001013367.1

      Status: PREDICTED

      Source sequence(s)
      BC090708
      UniProtKB/TrEMBL
      Q5CZU1
      Related
      ENSDARP00000027078.7, ENSDART00000024606.9
      Conserved Domains (1) summary
      pfam15440
      Location:16 → 49
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    2. NM_001430902.1 → NP_001417831.1  uncharacterized protein LOC503771 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CT574587
      UniProtKB/TrEMBL
      A0A8M3AVZ8
      Related
      ENSDARP00000101451.3, ENSDART00000111096.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      24101807..24118398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162696.5 → XP_005162753.1  uncharacterized protein LOC503771 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B9X5
      Conserved Domains (2) summary
      pfam10243
      Location:242 → 412
      MIP-T3; Microtubule-binding protein MIP-T3
      pfam15440
      Location:397 → 492
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    RNA

    1. XR_011008552.1 RNA Sequence

    2. XR_011008553.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395176.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      135288..154469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395365.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      135496..154676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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