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    mif4gda MIF4G domain containing a [ Danio rerio (zebrafish) ]

    Gene ID: 393355, updated on 9-Dec-2024

    Summary

    Official Symbol
    mif4gdaprovided by ZNC
    Official Full Name
    MIF4G domain containing aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1382
    See related
    Ensembl:ENSDARG00000102080 AllianceGenome:ZFIN:ZDB-GENE-040426-1382
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:64152
    Summary
    Predicted to enable translation activator activity. Predicted to be involved in regulation of translational initiation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human MIF4GD (MIF4G domain containing). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See mif4gda in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (19334499..19341243, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (22863178..22869912, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene small ubiquitin like modifier 2a Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 3a Neighboring gene growth factor receptor-bound protein 2a Neighboring gene melanin-concentrating hormone receptor 1a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC64152

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables translation activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of translational initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    MIF4G domain-containing protein A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200384.1NP_956678.1  MIF4G domain-containing protein A

      See identical proteins and their annotated locations for NP_956678.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053283
      UniProtKB/Swiss-Prot
      B0UXU6, Q7T324
      Related
      ENSDARP00000135400.1, ENSDART00000167674.2
      Conserved Domains (1) summary
      cl02652
      Location:15198
      MIF4G; MIF4G domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      19334499..19341243 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005166179.5XP_005166236.3  MIF4G domain-containing protein A isoform X1

      UniProtKB/Swiss-Prot
      B0UXU6, Q7T324
      UniProtKB/TrEMBL
      A0A8M2BDK1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394638.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      9211..15834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395253.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      9211..15834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)