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    erich3 glutamate-rich 3 [ Danio rerio (zebrafish) ]

    Gene ID: 797289, updated on 9-Dec-2024

    Summary

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    Official Symbol
    erich3provided by ZNC
    Official Full Name
    glutamate-rich 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070209-295
    See related
    Ensembl:ENSDARG00000069262 AllianceGenome:ZFIN:ZDB-GENE-070209-295
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:158613
    Summary
    Orthologous to human ERICH3 (glutamate rich 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See erich3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (17933474..17955597)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (17897762..17919819)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 44 member 5b Neighboring gene uncharacterized LOC137490310 Neighboring gene LIM/homeobox protein Lhx8 Neighboring gene TNNI3 interacting kinase Neighboring gene si:dkey-267j14.7 Neighboring gene fucose-1-phosphate guanylyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC158613

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    glutamate-rich protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083018.2 → NP_001076487.2  glutamate-rich protein 3

      Status: VALIDATED

      Source sequence(s)
      CR388090
      UniProtKB/TrEMBL
      A0A8M1NDK5, F1QKC6
      Related
      ENSDARP00000091424.4, ENSDART00000100651.5
      Conserved Domains (2) summary
      pfam15075
      Location:2 → 52
      DUF4542; Domain of unknown function (DUF4542)
      pfam15257
      Location:294 → 397
      DUF4590; Domain of unknown function (DUF4590)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      17933474..17955597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303859.3 → XP_009302134.1  glutamate-rich protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B4S6
      Conserved Domains (2) summary
      pfam15075
      Location:2 → 52
      DUF4542; Domain of unknown function (DUF4542)
      pfam15257
      Location:294 → 397
      DUF4590; Domain of unknown function (DUF4590)

    2. XM_009303861.3 → XP_009302136.1  glutamate-rich protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8M3AV22
      Conserved Domains (2) summary
      pfam15075
      Location:2 → 52
      DUF4542; Domain of unknown function (DUF4542)
      pfam15257
      Location:290 → 393
      DUF4590; Domain of unknown function (DUF4590)

    3. XM_009303860.3 → XP_009302135.1  glutamate-rich protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8M3B1W0
      Conserved Domains (2) summary
      pfam15075
      Location:2 → 52
      DUF4542; Domain of unknown function (DUF4542)
      pfam15257
      Location:294 → 397
      DUF4590; Domain of unknown function (DUF4590)
    Nucleotide Protein Strain
    Heading Accession and Version

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