coro1b coronin, actin binding protein, 1B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: coro1bprovided by ZNC
Official Full Name: coronin, actin binding protein, 1Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040123-3
See related: Ensembl:ENSDARG00000008660 AllianceGenome:ZFIN:ZDB-GENE-040123-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb1093; fc02d01; wu:fc02d01; zgc:165637
Summary: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and cell migration. Is expressed in nervous system and neural tube. Orthologous to human CORO1B (coronin 1B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (18617986..18656069, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (18365719..18403802, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables actin filament binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in actin filament organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in cell migration	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: coronin-1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109707.1 → NP_001103177.1 coronin-1B

See identical proteins and their annotated locations for NP_001103177.1

Status: PROVISIONAL

Source sequence(s)

BC152501

UniProtKB/TrEMBL

A7MD67

Related

ENSDARP00000007696.7, ENSDART00000021559.9

Conserved Domains (4) summary

pfam08953
Location:9 → 66

DUF1899; Domain of unknown function (DUF1899)

pfam16300
Location:346 → 388

WD40_4; Type of WD40 repeat

sd00039
Location:42 → 81

7WD40; WD40 repeat [structural motif]

cl02567
Location:78 → 303

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...