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    ints15 integrator complex subunit 15 [ Danio rerio (zebrafish) ]

    Gene ID: 393295, updated on 9-Dec-2024

    Summary

    Official Symbol
    ints15provided by ZNC
    Official Full Name
    integrator complex subunit 15provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1019
    See related
    Ensembl:ENSDARG00000037652 AllianceGenome:ZFIN:ZDB-GENE-040426-1019
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56409; zgc:77458
    Summary
    Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS15 (integrator complex subunit 15). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See ints15 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (9873310..9885325, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (9189123..9201240, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene phosphomannomutase 2 Neighboring gene regulator of G protein signaling 11 Neighboring gene post-glycosylphosphatidylinositol attachment to proteins 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC56409

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    part_of integrator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of integrator complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    integrator complex subunit 15
    Names
    uncharacterized protein C7orf26 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200325.1NP_956619.1  integrator complex subunit 15

      See identical proteins and their annotated locations for NP_956619.1

      Status: PROVISIONAL

      Source sequence(s)
      BC052107
      UniProtKB/Swiss-Prot
      Q7ZTY6
      Related
      ENSDARP00000119765.1, ENSDART00000138630.3
      Conserved Domains (1) summary
      pfam14964
      Location:2375
      DUF4507; Domain of unknown function (DUF4507)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      9873310..9885325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170851.5XP_005170908.1  integrator complex subunit 15 isoform X1

      See identical proteins and their annotated locations for XP_005170908.1

      UniProtKB/Swiss-Prot
      Q6NYU1, Q7ZTY6
      Related
      ENSDARP00000054842.6, ENSDART00000054843.7
      Conserved Domains (1) summary
      pfam14964
      Location:2375
      DUF4507; Domain of unknown function (DUF4507)