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    zgc:100868 zgc:100868 [ Danio rerio (zebrafish) ]

    Gene ID: 554458, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:100868provided by ZNC
    Official Full Name
    zgc:100868provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-33
    See related
    Ensembl:ENSDARG00000004748 AllianceGenome:ZFIN:ZDB-GENE-040801-33
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc74e04; im:7038378; im:7144259; wu:fc74e04
    Summary
    Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PRSS53 (serine protease 53). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See zgc:100868 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (39473189..39488482, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (39331331..39346638, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene phospholipase C, delta 3a Neighboring gene CLN3 lysosomal/endosomal transmembrane protein, battenin Neighboring gene Rho GTPase activating protein 23a Neighboring gene uncharacterized LOC101886825 Neighboring gene uncharacterized LOC137490714

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC100868

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables serine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003526.2NP_001003526.2  zgc:100868 precursor

      Status: VALIDATED

      Source sequence(s)
      BX537342
      UniProtKB/TrEMBL
      A0A0R4IRW8, A0A8M2BBA2, Q6DEK7
      Related
      ENSDARP00000138127.1, ENSDART00000161644.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      39473189..39488482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)