nol6 nucleolar protein 6 (RNA-associated) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nol6provided by ZNC
Official Full Name: nucleolar protein 6 (RNA-associated)provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6294
See related: Ensembl:ENSDARG00000059711 AllianceGenome:ZFIN:ZDB-GENE-030131-6294
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fi43b02
Summary: Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing and tRNA export from nucleus. Predicted to be located in nucleus. Predicted to be part of CURI complex; UTP-C complex; and small-subunit processome. Orthologous to human NOL6 (nucleolar protein 6). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 26

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (50869769..50897886)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (50223176..50251293)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AW171554 (e-PCR)
- UniSTS:205826

fe14h05.y1 (e-PCR)
- UniSTS:196209

fd22f03.y1 (e-PCR)
- UniSTS:195287

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in rRNA processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in tRNA export from nucleus	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of CURI complex	IBA Inferred from Biological aspect of Ancestor more info
part_of UTP-C complex	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: nucleolar protein 6

Names: nucleolar protein family 6 (RNA-associated)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.