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    faua FAU ubiquitin like and ribosomal protein S30 fusion a [ Danio rerio (zebrafish) ]

    Gene ID: 393710, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fauaprovided by ZNC
    Official Full Name
    FAU ubiquitin like and ribosomal protein S30 fusion aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1700
    See related
    Ensembl:ENSDARG00000099022 AllianceGenome:ZFIN:ZDB-GENE-040426-1700
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fau; zgc:73171
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in cytosol and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human FAU (FAU ubiquitin like and ribosomal protein S30 fusion). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See faua in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (54201457..54211168, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (54512685..54522396)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase pellino homolog 2 Neighboring gene ADP-ribosylation factor 6a Neighboring gene PRP39 pre-mRNA processing factor 39 homolog (yeast) Neighboring gene FKBP prolyl isomerase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC73171

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    FAU ubiquitin like and ribosomal protein S30 fusion a
    Names
    Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30
    Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200737.1 → NP_957031.1  FAU ubiquitin like and ribosomal protein S30 fusion a

      See identical proteins and their annotated locations for NP_957031.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059522
      UniProtKB/TrEMBL
      A0A8M1PDC2, Q6PC01
      Related
      ENSDARP00000141629.1, ENSDART00000169386.2
      Conserved Domains (3) summary
      cd01793
      Location:1 → 74
      Fubi; Fubi ubiquitin-like protein
      smart00213
      Location:1 → 70
      UBQ; Ubiquitin homologues
      pfam04758
      Location:75 → 132
      Ribosomal_S30; Ribosomal protein S30

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      54201457..54211168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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