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    si:ch211-227n13.3 si:ch211-227n13.3 [ Danio rerio (zebrafish) ]

    Gene ID: 558023, updated on 3-Dec-2024

    Summary

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    Official Symbol
    si:ch211-227n13.3provided by ZNC
    Official Full Name
    si:ch211-227n13.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141222-2
    See related
    Ensembl:ENSDARG00000101271 AllianceGenome:ZFIN:ZDB-GENE-141222-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:ch211-227n13.3 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (33861177..33868942, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (33598375..33606083, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene speckle type BTB/POZ protein like b Neighboring gene neurexophilin 2b Neighboring gene phosphorylase kinase, alpha 2 (liver) Neighboring gene collagen, type VI, alpha 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein si:ch211-227n13.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      33861177..33868942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224382.1 → XP_068080483.1  uncharacterized protein si:ch211-227n13.3 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IR42, A0A8M9QM28

    2. XM_021479870.2 → XP_021335545.1  uncharacterized protein si:ch211-227n13.3 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IR42, A0A8M9QM28

    3. XM_699579.10 → XP_704671.5  uncharacterized protein si:ch211-227n13.3 isoform X2

      See identical proteins and their annotated locations for XP_704671.5

      UniProtKB/TrEMBL
      A0A0R4IR42, A0A8M9QM28
      Related
      ENSDARP00000137395.1, ENSDART00000172633.2

    4. XM_005169393.5 → XP_005169450.1  uncharacterized protein si:ch211-227n13.3 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHA0
    Nucleotide Protein
    Heading Accession and Version

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