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    tmsb5 thymosin beta 5 [ Danio rerio (zebrafish) ]

    Gene ID: 796588, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tmsb5provided by ZNC
    Official Full Name
    thymosin beta 5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-198
    See related
    Ensembl:ENSDARG00000093886 AllianceGenome:ZFIN:ZDB-GENE-090313-198
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Tbeta-b; si:dkey-167i21.2
    Summary
    Predicted to enable actin monomer binding activity. Predicted to be involved in regulation of cell migration and sequestering of actin monomers. Predicted to be active in cytoplasm. Orthologous to human TMSB15A (thymosin beta 15A) and TMSB15B (thymosin beta 15B). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See tmsb5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (18810891..18811487, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (18117954..18118550, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 Neighboring gene phosphoglucomutase 2 Neighboring gene solute carrier family 25 member 51a Neighboring gene uncharacterized LOC100535985

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Vertebrate beta-thymosins: conserved synteny reveals the relationship between those of bony fish and of land vertebrates. Edwards J. FEBS Lett, 2010 Mar 5. PMID 20138884
    2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • thymosin beta-b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015622.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC159109
      Related
      ENSDART00000142026.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      18810891..18811487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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