si:ch211-106n13.3 si:ch211-106n13.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-106n13.3provided by ZNC
Official Full Name: si:ch211-106n13.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9088
See related: Ensembl:ENSDARG00000052633 AllianceGenome:ZFIN:ZDB-GENE-030131-9088
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa99a09; wu:fa99a09
Orthologs: all
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Genomic context

See si:ch211-106n13.3 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (49987088..50053006, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (50252858..50325881, complement)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: vWFA and Collagen domain-containing protein

Names: novel collagen protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045014.1 → NP_001038479.1 vWFA and Collagen domain-containing protein

Status: PREDICTED

Source sequence(s)

BX005176

UniProtKB/TrEMBL

A0A8N7UYA0, Q1LYI5

Related

ENSDARP00000078089.5, ENSDART00000083654.7

Conserved Domains (3) summary

pfam01391
Location:660 → 719

Collagen; Collagen triple helix repeat (20 copies)

cl00057
Location:12 → 196

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cl22861
Location:206 → 395

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...