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    TMEM26-AS1 TMEM26 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928781, updated on 22-Oct-2024

    Summary

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    Official Symbol
    TMEM26-AS1provided by HGNC
    Official Full Name
    TMEM26 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:51209
    See related
    Ensembl:ENSG00000237233 AllianceGenome:HGNC:51209
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in spleen (RPKM 1.7), testis (RPKM 1.0) and 14 other tissues See more
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    Genomic context

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    See TMEM26-AS1 in Genome Data Viewer
    Location:
    10q21.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (61452639..61493433)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (62309405..62350194)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (63212397..63253191)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378323 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3396 Neighboring gene Sharpr-MPRA regulatory region 6196 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:62968524-62968739 Neighboring gene MPRA-validated peak953 silencer Neighboring gene uncharacterized LOC124900292 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:63169609-63170808 Neighboring gene NANOG hESC enhancer GRCh37_chr10:63174492-63174993 Neighboring gene MPRA-validated peak956 silencer Neighboring gene Sharpr-MPRA regulatory region 6107 Neighboring gene transmembrane protein 26 Neighboring gene uncharacterized LOC124902548 Neighboring gene MPRA-validated peak957 silencer Neighboring gene uncharacterized LOC124902535 Neighboring gene MPRA-validated peak958 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr10:63403079-63403697 Neighboring gene ciliary associated calcium binding coiled-coil 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120643.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BC041470

    2. NR_120644.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks multiple exons and contains alternate 5' and 3' terminal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      BX100788

    3. NR_120645.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks multiple exons and contains alternate 5' and 3' exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL356952
      Related
      ENST00000785389.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      61452639..61493433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      62309405..62350194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials