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    Protease-associated (PA) RING/U-box zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838873, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protease-associated (PA) RING/U-box zinc finger family protein
    Primary source
    TAIR:AT1G22670
    Locus tag
    AT1G22670
    See related
    Araport:AT1G22670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22J18.16; T22J18_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8021835..8023516, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb domain protein 3 Neighboring gene Plant neutral invertase family protein Neighboring gene Polynucleotide adenylyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene Gibberellin-regulated family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protease-associated (PA) RING/U-box zinc finger family protein
    NP_173681.1
    • Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8678 Blast hits to 8642 proteins in 327 species: Archae - 0; Bacteria - 157; Metazoa - 2256; Fungi - 639; Plants - 4696; Viruses - 9; Other Eukaryotes - 921 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8021835..8023516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102114.2 → NP_173681.1  Protease-associated (PA) RING/U-box zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173681.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I2Y3, O80554
      UniProtKB/TrEMBL
      A0A178WJS9, A0A5S9VMM2
      Conserved Domains (3) summary
      COG5243
      Location:163 → 314
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd02123
      Location:17 → 160
      PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
      cd16486
      Location:231 → 274
      mRING-H2-C3H2C2D_ZSWM2; Modified RING finger, H2 subclass (C3H2C2D-type), found in zinc finger SWIM domain-containing protein 2 (ZSWIM2) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I2Y3.1

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