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    seed dormancy control protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838101, updated on 18-Sep-2024

    Summary

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    Official Full Name
    seed dormancy control protein
    Primary source
    TAIR:AT1G15320
    Locus tag
    AT1G15320
    See related
    Araport:AT1G15320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.26; F9L1_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5272256..5274074, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene signal recognition particle 54 kDa subunit Neighboring gene Cystathionine beta-synthase (CBS) protein Neighboring gene methyl-CPG-binding domain 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001123822.1
    NM_101401.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    seed dormancy control protein
    NP_001117294.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_172984.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 62 Blast hits to 62 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5272256..5274074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001123822.1 → NP_001117294.1  seed dormancy control protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117294.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EKV1, A0A7G2DQW6, B3H538
      Conserved Domains (1) summary
      pfam14144
      Location:83 → 147
      DOG1; Seed dormancy control

    2. NM_101401.3 → NP_172984.1  seed dormancy control protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172984.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGS1, A0ME69, Q1PFW1
      Conserved Domains (1) summary
      pfam14144
      Location:97 → 165
      DOG1; Seed dormancy control
    Nucleotide Protein
    Heading Accession and Version

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