U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842904, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
    Primary source
    TAIR:AT1G65920
    Locus tag
    AT1G65920
    See related
    Araport:AT1G65920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12P19.9; F12P19_9
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (24525102..24529362, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plant/protein Neighboring gene NAC domain containing protein 28 Neighboring gene cytosolic NADP+-dependent isocitrate dehydrogenase Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001334226.1
    NM_105264.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
    NP_176767.1
    • Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G42140.1); Has 20784 Blast hits to 8293 proteins in 486 species: Archae - 65; Bacteria - 2335; Metazoa - 8187; Fungi - 1149; Plants - 2727; Viruses - 3; Other Eukaryotes - 6318 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24525102..24529362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105264.3 → NP_176767.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176767.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WD30, Q9SRZ7
      Conserved Domains (6) summary
      COG1196
      Location:798 → 864
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      COG5184
      Location:291 → 646
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      cd13365
      Location:14 → 126
      PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
      pfam01363
      Location:639 → 699
      FYVE; FYVE zinc finger
      pfam08381
      Location:948 → 1001
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam13713
      Location:839 → 874
      BRX_N; Transcription factor BRX N-terminal domain

    2. NM_001334226.1 → NP_001320309.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WD30, A0A1P8AMH6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.