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    hypothetical protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820038, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (Protein of unknown function, DUF538)
    Primary source
    TAIR:AT3G08890
    Locus tag
    AT3G08890
    See related
    Araport:AT3G08890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (2706534..2708747)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene plectin-like protein Neighboring gene miscRNA Neighboring gene reversibly glycosylated polypeptide 3 Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111723.4
    NM_180213.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (Protein of unknown function, DUF538)
    NP_566336.1
    • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850544.1
    • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2706534..2708747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180213.2 → NP_850544.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850544.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V896, A0A384LH42, Q9SR89
      Conserved Domains (1) summary
      pfam04398
      Location:55 → 158
      DUF538; Protein of unknown function, DUF538

    2. NM_111723.4 → NP_566336.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566336.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V896, A0A384LH42, Q9SR89
      Conserved Domains (1) summary
      pfam04398
      Location:55 → 158
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version

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