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    U11/U12 small nuclear ribonucleoprotein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819571, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U11/U12 small nuclear ribonucleoprotein
    Primary source
    TAIR:AT3G04160
    Locus tag
    AT3G04160
    See related
    Araport:AT3G04160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6K12.22; T6K12_22
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (1091089..1094348, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene RmlC-like cupins superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis homolog of human minor spliceosomal protein U11-48K plays a crucial role in U12 intron splicing and plant development. Xu T, et al. J Exp Bot, 2016 May. PMID 27091878, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202875.1
    NM_001337505.1
    NM_111287.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U11/U12 small nuclear ribonucleoprotein
    NP_001189804.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage.
    NP_187066.1
    • unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1091089..1094348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111287.3 → NP_187066.1  U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187066.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J3L0, Q9M8X2
      UniProtKB/TrEMBL
      A0A178V9S2, A0A5S9X8X8
      Conserved Domains (2) summary
      pfam05253
      Location:99 → 122
      zf-U11-48K; U11-48K-like CHHC zinc finger
      cl23739
      Location:511 → 585
      HCP_like; The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved ...

    2. NM_001337505.1 → NP_001326557.1  U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J3L0, Q9M8X2
      UniProtKB/TrEMBL
      A0A178V9S2, A0A5S9X8X8

    3. NM_001202875.1 → NP_001189804.1  U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189804.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9S2, A0A5S9X8X8
      Conserved Domains (2) summary
      pfam05253
      Location:99 → 122
      zf-U11-48K; U11-48K-like CHHC zinc finger
      cl23739
      Location:513 → 587
      HCP_like; The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M8X2.1

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