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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821880, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT3G23060
    Locus tag
    AT3G23060
    See related
    Araport:AT3G23060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (8200636..8203335)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene indole-3-acetic acid 7 Neighboring gene CRM family member 3A Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of AtBMI1C, a polycomb group protein gene, accelerates flowering in Arabidopsis. Li W, et al. PLoS One, 2011. PMID 21701597, Free PMC Article
    2. Regulation of the new Arabidopsis imprinted gene AtBMI1C requires the interplay of different epigenetic mechanisms. Bratzel F, et al. Mol Plant, 2012 Jan. PMID 21914649
    3. The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development. Merini W, et al. Plant Physiol, 2017 Jan. PMID 27837089, Free PMC Article
    4. The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity. Gómez-Zambrano Á, et al. Nat Commun, 2019 Jun 27. PMID 31249301, Free PMC Article
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. H2A.Z can be monoubiquitinated by the PRC1 components AtBMI1A/B/C.
      Title: The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity.
    2. BMI1c expression and role in the plant development
      Title: The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development.
    3. AtBMI1C is an imprinted gene expressed from the maternal allele in the endosperm but biallelically expressed in stamen. It was found that the characteristic expression pattern of AtBMI1C is the result of a complex epigenetic regulation that involves CG DNA methylation, RNA-directed non-CG DNA methylation (RdDM), and PcG activity. [BMI1C]
      Title: Regulation of the new Arabidopsis imprinted gene AtBMI1C requires the interplay of different epigenetic mechanisms.
    4. Results suggest that AtBMI1C participates in flowering time control by regulating the expression of FLC
      Title: Overexpression of AtBMI1C, a polycomb group protein gene, accelerates flowering in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338611.1
    NM_113206.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_188946.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: central cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1); Has 1905 Blast hits to 1881 proteins in 164 species: Archae - 0; Bacteria - 4; Metazoa - 1370; Fungi - 69; Plants - 271; Viruses - 4; Other Eukaryotes - 187 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8200636..8203335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113206.5 → NP_188946.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188946.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LS86
      UniProtKB/TrEMBL
      A0A178VJ20, A0A5S9XES4
      Conserved Domains (3) summary
      cd00162
      Location:16 → 56
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd17087
      Location:364 → 467
      RAWUL_DRIP_like; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in DREB2A-interacting protein (DRIP) and similar proteins
      cl17238
      Location:14 → 57
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001338611.1 → NP_001327765.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTB6, A0A5S9XES4, A0A654FBR9
      Conserved Domains (2) summary
      cl17238
      Location:14 → 57
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl28922
      Location:367 → 464
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LS86.1

    Gene LinkOut

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