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    pre-mRNA-splicing factor of RES complex protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840077, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-mRNA-splicing factor of RES complex protein
    Primary source
    TAIR:AT1G31870
    Locus tag
    AT1G31870
    See related
    Araport:AT1G31870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5M6.12; F5M6_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (11436719..11440275)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene histidine biosynthesis bifunctional protein (HISIE) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein Neighboring gene NOD26-like intrinsic protein 3;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtBUD13 affects pre-mRNA splicing and is essential for embryo development in Arabidopsis. Xiong F, et al. Plant J, 2019 May. PMID 30720904
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtBUD13 plays critical roles in early embryo development by effecting pre-mRNA splicing.
      Title: AtBUD13 affects pre-mRNA splicing and is essential for embryo development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036047.3
    NM_102924.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor of RES complex protein
    NP_001031124.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_174470.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species: Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11436719..11440275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036047.3 → NP_001031124.1  pre-mRNA-splicing factor of RES complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WHS4, Q9C6S8
      Conserved Domains (2) summary
      pfam09736
      Location:384 → 544
      Bud13; Pre-mRNA-splicing factor of RES complex
      pfam15376
      Location:153 → 365
      DUF4603; Domain of unknown function (DUF4603)

    2. NM_102924.3 → NP_174470.1  pre-mRNA-splicing factor of RES complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174470.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WHS4, Q9C6S8
      Conserved Domains (2) summary
      pfam09736
      Location:384 → 544
      Bud13; Pre-mRNA-splicing factor of RES complex
      pfam15376
      Location:153 → 365
      DUF4603; Domain of unknown function (DUF4603)
    Nucleotide Protein
    Heading Accession and Version

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