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    CYP79F1 cytochrome p450 79f1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838211, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYP79F1
    Official Full Name
    cytochrome p450 79f1
    Primary source
    TAIR:AT1G16410
    Locus tag
    AT1G16410
    See related
    Araport:AT1G16410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BUS1; BUSHY 1; cytochrome p450 79f1; F3O9.21; F3O9_21; SPS1; SUPERSHOOT 1
    Summary
    member of CYP79F
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    Genomic context

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    See CYP79F1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5608682..5612064)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene organic cation/carnitine transporter 3 Neighboring gene cytochrome P450, family 79, subfamily F, polypeptide 2 Neighboring gene metacaspase 8 Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. Chen S, et al. Plant J, 2003 Mar. PMID 12609033
    2. Bus, a bushy Arabidopsis CYP79F1 knockout mutant with abolished synthesis of short-chain aliphatic glucosinolates. Reintanz B, et al. Plant Cell, 2001 Feb. PMID 11226190, Free PMC Article
    3. Water stress and aphid feeding differentially influence metabolite composition in Arabidopsis thaliana (L.). Mewis I, et al. PLoS One, 2012. PMID 23144921, Free PMC Article
    4. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101507.3
    NM_202111.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within glucosinolate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to insect IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    cytochrome p450 79f1
    NP_563996.2
    • cytochrome p450 79f1 (CYP79F1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily F, polypeptide 2 (TAIR:AT1G16400.1); Has 27252 Blast hits to 27093 proteins in 1494 species: Archae - 44; Bacteria - 2170; Metazoa - 10673; Fungi - 5027; Plants - 8510; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink).
    NP_973840.1
    • cytochrome p450 79f1 (CYP79F1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily F, polypeptide 2 (TAIR:AT1G16400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5608682..5612064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101507.3 → NP_563996.2  cytochrome p450 79f1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563996.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A5YZH1, A5YZH3, A5YZH4, A5YZH6, A5YZH9, A5YZI0, A5YZI1, A5YZI6, A5YZI9, A5YZJ1, Q3EDB1, Q941N8, Q949U1, Q9SA40
      UniProtKB/TrEMBL
      A0A178WCC6
      Conserved Domains (1) summary
      PLN03018
      Location:1 → 538
      PLN03018; homomethionine N-hydroxylase

    2. NM_202111.2 → NP_973840.1  cytochrome p450 79f1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973840.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q949U1
      Conserved Domains (1) summary
      cl12078
      Location:1 → 414
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q949U1.1

    Gene LinkOut

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