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    FBD, F-box and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826581, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box and Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT4G09920
    Locus tag
    AT4G09920
    See related
    Araport:AT4G09920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5L19.50; T5L19_50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (6224344..6226116)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit, putative (DUF3511) Neighboring gene methyl esterase 12 Neighboring gene Avirulence induced gene (AIG1) family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340642.1
    NM_117060.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box and Leucine Rich Repeat domains containing protein
    NP_192730.2
    • FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6224344..6226116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340639.1 → NP_001329464.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7S5

    2. NM_001340640.1 → NP_001329463.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7S5

    3. NM_001340641.1 → NP_001329466.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7S5

    4. NM_117060.3 → NP_192730.2  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192730.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JKU5, Q9T0F1
      Conserved Domains (3) summary
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 46
      F-box; F-box domain
      pfam07723
      Location:152 → 177
      LRR_2; Leucine Rich Repeat

    5. NM_001340642.1 → NP_001329465.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JKU5, Q9T0F1
      Conserved Domains (3) summary
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 46
      F-box; F-box domain
      pfam07723
      Location:152 → 177
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0F1.2

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