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    FBD, F-box and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842015, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box and Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT1G55660
    Locus tag
    AT1G55660
    See related
    Araport:AT1G55660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20N2.9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (20800694..20802377)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene prenylated RAB acceptor 1.G1 Neighboring gene HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene photosystem I subunit G Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis F-box protein FOF2 regulates ABA-mediated seed germination and drought tolerance. Qu L, et al. Plant Sci, 2020 Dec. PMID 33218620
    2. A photo-responsive F-box protein FOF2 regulates floral initiation by promoting FLC expression in Arabidopsis. He R, et al. Plant J, 2017 Sep. PMID 28608936
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of long-day photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of short-day photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box and Leucine Rich Repeat domains containing protein
    NP_001185242.1
    • FBD, F-box and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G00315.1).
    NP_175962.1
    • FBD, F-box and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G00315.1); Has 2322 Blast hits to 2273 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 68; Fungi - 4; Plants - 2247; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20800694..20802377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198313.2 → NP_001185242.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185242.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFK0, Q9LG01
      Conserved Domains (3) summary
      sd00032
      Location:186 → 207
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:53 → 100
      F-box; F-box domain
      pfam07723
      Location:207 → 232
      LRR_2; Leucine Rich Repeat

    2. NM_104442.1 → NP_175962.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175962.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDM4, F4I1V3
      Conserved Domains (4) summary
      smart00579
      Location:420 → 492
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:186 → 207
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:53 → 100
      F-box; F-box domain
      pfam07723
      Location:207 → 232
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PFK0.1

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