U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SCY1 SECY homolog 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816386, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SCY1
    Official Full Name
    SECY homolog 1
    Primary source
    TAIR:AT2G18710
    Locus tag
    AT2G18710
    See related
    Araport:AT2G18710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SECY homolog 1
    Summary
    Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SCY1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (8112084..8114485, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene trehalose phosphatase/synthase 11 Neighboring gene Translation elongation factor EF1A/initiation factor IF2gamma family protein Neighboring gene uncharacterized protein Neighboring gene diacylglycerol kinase 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sorting of SEC translocase SCY components to different membranes in chloroplasts. Singhal R, et al. J Exp Bot, 2017 Nov 2. PMID 28992187, Free PMC Article
    2. The thylakoid membrane protein ALB3 associates with the cpSecY-translocase in Arabidopsis thaliana. Klostermann E, et al. Biochem J, 2002 Dec 15. PMID 12217076, Free PMC Article
    3. Chloroplast SecY is complexed to SecE and involved in the translocation of the 33-kDa but not the 23-kDa subunit of the oxygen-evolving complex. Schuenemann D, et al. J Biol Chem, 1999 Apr 23. PMID 10207046
    4. Identification of Putative Substrates of SEC2, a Chloroplast Inner Envelope Translocase. Li Y, et al. Plant Physiol, 2017 Apr. PMID 28213560, Free PMC Article
    5. In vitro reconstitution of co-translational D1 insertion reveals a role of the cpSec-Alb3 translocase and Vipp1 in photosystem II biogenesis. Walter B, et al. Biochem J, 2015 Jun 1. PMID 25803492

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_127427.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within thylakoid membrane organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SECY homolog 1
    NP_179461.1
    • SECY homolog 1 (SCY1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G31530.1); Has 9180 Blast hits to 9165 proteins in 2700 species: Archae - 72; Bacteria - 5385; Metazoa - 19; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8112084..8114485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127427.3 → NP_179461.1  SECY homolog 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179461.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38885, Q9SLG1
      UniProtKB/TrEMBL
      A0A178VZD7, A0A5S9WZD5, A0A7G2EBL5
      Conserved Domains (1) summary
      PRK09204
      Location:130 → 539
      secY; preprotein translocase subunit SecY; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38885.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools