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    BBC1 breast basic conserved 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824062, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BBC1
    Official Full Name
    breast basic conserved 1
    Primary source
    TAIR:AT3G49010
    Locus tag
    AT3G49010
    See related
    Araport:AT3G49010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    40S RIBOSOMAL PROTEIN; ATBBC1; breast basic conserved 1; RSU2
    Summary
    Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
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    Genomic context

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    See BBC1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (18166708..18168700, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA polymerase III subunit RPC82 family protein Neighboring gene miscRNA Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Drosophila melanogaster homologue of the human BBC1 gene is highly expressed during embryogenesis. Helps NR, et al. Gene, 1995 Sep 11. PMID 7557437
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    5. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035754.1
    NM_001084791.1
    NM_001084792.1
    NM_001339393.1
    NM_001339394.1
    NM_114760.4
    NM_180341.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation TAS
    Traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in ribosome TAS
    Traceable Author Statement
    more info
    		  

    General protein information

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    Preferred Names
    breast basic conserved 1
    NP_001030831.1
    • breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078260.1
    • breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 743 Blast hits to 743 proteins in 279 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 163; Plants - 147; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
    NP_001078261.1
    • breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 742 Blast hits to 736 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 161; Plants - 147; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
    NP_190470.1
    • breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
    NP_850672.1
    • breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18166708..18168700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180341.3 → NP_850672.1  breast basic conserved 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850672.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P41127, Q42280, Q8LFC4
      UniProtKB/TrEMBL
      A0A178VD16, A0A384KBX2, A0A7G2EV29, B9DGA4
      Conserved Domains (1) summary
      pfam01294
      Location:6 → 185
      Ribosomal_L13e; Ribosomal protein L13e

    2. NM_001339393.1 → NP_001327179.1  breast basic conserved 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P41127, Q42280, Q8LFC4
      UniProtKB/TrEMBL
      A0A178VD16, A0A384KBX2, A0A7G2EV29, B9DGA4
      Conserved Domains (1) summary
      pfam01294
      Location:6 → 185
      Ribosomal_L13e; Ribosomal protein L13e

    3. NM_001084791.1 → NP_001078260.1  breast basic conserved 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078260.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EV29, A8MQA1
      Conserved Domains (1) summary
      pfam01294
      Location:8 → 180
      Ribosomal_L13e; Ribosomal protein L13e

    4. NM_001339394.1 → NP_001327180.1  breast basic conserved 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P41127, Q42280, Q8LFC4
      UniProtKB/TrEMBL
      A0A178VD16, A0A384KBX2, A0A7G2EV29, B9DGA4
      Conserved Domains (1) summary
      pfam01294
      Location:6 → 185
      Ribosomal_L13e; Ribosomal protein L13e

    5. NM_001084792.1 → NP_001078261.1  breast basic conserved 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078261.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IWP7
      Conserved Domains (1) summary
      cl01799
      Location:8 → 129
      Ribosomal_L13e; Ribosomal protein L13e

    6. NM_001035754.1 → NP_001030831.1  breast basic conserved 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030831.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P41127, Q42280, Q8LFC4
      UniProtKB/TrEMBL
      A0A178VD16, A0A384KBX2, A0A7G2EV29, B9DGA4
      Conserved Domains (1) summary
      pfam01294
      Location:6 → 185
      Ribosomal_L13e; Ribosomal protein L13e

    7. NM_114760.4 → NP_190470.1  breast basic conserved 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190470.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P41127, Q42280, Q8LFC4
      UniProtKB/TrEMBL
      A0A178VD16, A0A384KBX2, A0A7G2EV29, B9DGA4
      Conserved Domains (1) summary
      pfam01294
      Location:6 → 185
      Ribosomal_L13e; Ribosomal protein L13e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P41127.1

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