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    Translation elongation factor EF1B, gamma chain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837491, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation elongation factor EF1B, gamma chain
    Primary source
    TAIR:AT1G09640
    Locus tag
    AT1G09640
    See related
    Araport:AT1G09640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21M12.3; F21M12_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (3119739..3122542)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase Neighboring gene uncharacterized protein Neighboring gene RAB GTPase 11C Neighboring gene uncharacterized protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
    2. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198020.1
    NM_100836.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Translation elongation factor EF1B, gamma chain
    NP_001184949.1
    • Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G57720.2).
    NP_563848.1
    • Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G57720.2); Has 8999 Blast hits to 8983 proteins in 1311 species: Archae - 2; Bacteria - 4523; Metazoa - 1774; Fungi - 604; Plants - 732; Viruses - 0; Other Eukaryotes - 1364 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3119739..3122542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100836.4 → NP_563848.1  Translation elongation factor EF1B, gamma chain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563848.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04487, Q8RXL5
      UniProtKB/TrEMBL
      A0A178W9F9, A0A384KT07, B9DHI9
      Conserved Domains (3) summary
      cd03181
      Location:90 → 210
      GST_C_EF1Bgamma_like; Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins
      cd03044
      Location:3 → 77
      GST_N_EF1Bgamma; GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of ...
      pfam00647
      Location:255 → 361
      EF1G; Elongation factor 1 gamma, conserved domain

    2. NM_001198020.1 → NP_001184949.1  Translation elongation factor EF1B, gamma chain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184949.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z2L8
      Conserved Domains (3) summary
      PLN02395
      Location:13 → 208
      PLN02395; glutathione S-transferase
      cd03181
      Location:90 → 204
      GST_C_EF1Bgamma_like; Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins
      cd03044
      Location:3 → 77
      GST_N_EF1Bgamma; GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04487.1

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