U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    transmembrane protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819214, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    transmembrane protein-like protein
    Primary source
    TAIR:AT2G46060
    Locus tag
    AT2G46060
    See related
    Araport:AT2G46060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3F17.29
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (18941099..18945112, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene mitogen-activated protein kinase 12 Neighboring gene BPS1-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001337176.1
    NM_180113.3
    NM_180114.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein-like protein
    NP_850444.1
    • transmembrane protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3522 (InterPro:IPR021910), EGF-like region, conserved site (InterPro:IPR013032); Has 154 Blast hits to 154 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    NP_850445.1
    • transmembrane protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3522 (InterPro:IPR021910), EGF-like region, conserved site (InterPro:IPR013032); Has 154 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18941099..18945112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180113.3 → NP_850444.1  transmembrane protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850444.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS34, A0A5S9X844, Q8RWX6
      Conserved Domains (1) summary
      pfam12036
      Location:560 → 766
      DUF3522; Protein of unknown function (DUF3522)

    2. NM_001337176.1 → NP_001323926.1  transmembrane protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS34, A0A1P8AYH4

    3. NM_180114.3 → NP_850445.1  transmembrane protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850445.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGM5, Q8W0Z5
      Conserved Domains (1) summary
      pfam12036
      Location:564 → 761
      DUF3522; Protein of unknown function (DUF3522)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.