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    ATA20 anther 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820779, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATA20
    Official Full Name
    anther 20
    Primary source
    TAIR:AT3G15400
    Locus tag
    AT3G15400
    See related
    Araport:AT3G15400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anther 20
    Summary
    Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.
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    Genomic context

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    See ATA20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5201622..5203197)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plasma-membrane choline transporter family protein Neighboring gene silencing defective 5 Neighboring gene HrpN-interacting protein from malus protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Transcription factor TFIIIC, tau55-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification, sequence analysis and expression studies of novel anther-specific genes of Arabidopsis thaliana. Rubinelli P, et al. Plant Mol Biol, 1998 Jul. PMID 9687065
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338169.1
    NM_112408.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    anther 20
    NP_001319559.1
    • anther 20 (ATA20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; Has 84917 Blast hits to 22330 proteins in 1596 species: Archae - 105; Bacteria - 34710; Metazoa - 21170; Fungi - 4235; Plants - 7034; Viruses - 983; Other Eukaryotes - 16680 (source: NCBI BLink).
    NP_188159.1
    • anther 20 (ATA20); Has 85610 Blast hits to 22901 proteins in 1663 species: Archae - 108; Bacteria - 34930; Metazoa - 21370; Fungi - 4329; Plants - 7115; Viruses - 983; Other Eukaryotes - 16775 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5201622..5203197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112408.3 → NP_188159.1  anther 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188159.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F7F6, Q9LD84
      Conserved Domains (1) summary
      cl14695
      Location:334 → 360
      PHA03410; hypothetical protein; Provisional

    2. NM_001338169.1 → NP_001319559.1  anther 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F7F6, F4IYR6
    Nucleotide Protein
    Heading Accession and Version

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