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    TATA-binding related factor (TRF) of subunit 20 of Mediator complex [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817369, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TATA-binding related factor (TRF) of subunit 20 of Mediator complex
    Primary source
    TAIR:AT2G28230
    Locus tag
    AT2G28230
    See related
    Araport:AT2G28230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3B23.10; T3B23_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12037627..12039059, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene aspartic proteinase CDR1-like protein Neighboring gene aspartic proteinase CDR1-like protein Neighboring gene ATP-dependent helicase family protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana. Fallath T, et al. PLoS One, 2017. PMID 28441405, Free PMC Article
    2. The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana. Kim YJ, et al. EMBO J, 2011 Mar 2. PMID 21252857, Free PMC Article
    3. Interaction map of Arabidopsis Mediator complex expounding its topology. Maji S, et al. Nucleic Acids Res, 2019 May 7. PMID 30793213, Free PMC Article
    4. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336151.1
    NM_128383.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within miRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of salicylic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TATA-binding related factor (TRF) of subunit 20 of Mediator complex
    NP_180390.2
    • TATA-binding related factor (TRF) of subunit 20 of Mediator complex; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med20 (InterPro:IPR013921); BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT4G09070.1); Has 80 Blast hits to 80 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12037627..12039059 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128383.4 → NP_180390.2  TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180390.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NPF4, Q9SL32
      UniProtKB/TrEMBL
      A0A178VT75, A0A5S9X235
      Conserved Domains (1) summary
      pfam08612
      Location:1 → 208
      Med20; TATA-binding related factor (TRF) of subunit 20 of Mediator complex

    2. NM_001336151.1 → NP_001324170.1  TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZA2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NPF4.1

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