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    transmembrane protein (DUF872) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816452, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF872)
    Primary source
    TAIR:AT2G19350
    Locus tag
    AT2G19350
    See related
    Araport:AT2G19350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27F23.15; F27F23_15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (8376155..8377356)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene plant intracellular ras group-related LRR 6 Neighboring gene Oligosaccharyltransferase complex/magnesium transporter family protein Neighboring gene ncRNA Neighboring gene tRNA-splicing ligase, putative (DUF239) Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene zinc ion binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127492.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein (DUF872)
    NP_565449.1
    • Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT4G29850.1); Has 270 Blast hits to 270 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 166; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8376155..8377356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127492.3 → NP_565449.1  transmembrane protein (DUF872) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565449.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTJ4, A0A7G2E7G2, O64568
      Conserved Domains (1) summary
      pfam05915
      Location:30 → 102
      DUF872; Eukaryotic protein of unknown function (DUF872)
    Nucleotide Protein
    Heading Accession and Version

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