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    ATVPS33 Sec1/munc18-like (SM) proteins superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824651, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATVPS33
    Official Full Name
    Sec1/munc18-like (SM) proteins superfamily
    Primary source
    TAIR:AT3G54860
    Locus tag
    AT3G54860
    See related
    Araport:AT3G54860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    VACUOLAR PROTEIN SORTING 33; VPS33
    Summary
    Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.
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    Genomic context

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    See ATVPS33 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    23
    Sequence:
    Chromosome: 3; NC_003074.8 (20324088..20330030, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ras-related small GTP-binding family protein Neighboring gene plant U-box 14 Neighboring gene Armadillo/beta-catenin repeat family protein / kinesin motor family protein Neighboring gene zinc finger protein Neighboring gene chlorophyll a-b binding protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phosphoinositides control the localization of HOPS subunit VPS41, which together with VPS33 mediates vacuole fusion in plants. Brillada C, et al. Proc Natl Acad Sci U S A, 2018 Aug 28. PMID 30104351, Free PMC Article
    2. The AtC-VPS protein complex is localized to the tonoplast and the prevacuolar compartment in arabidopsis. Rojo E, et al. Mol Biol Cell, 2003 Feb. PMID 12589039, Free PMC Article
    3. Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Takemoto K, et al. Proc Natl Acad Sci U S A, 2018 Mar 6. PMID 29463724, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161207.1
    NM_115343.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within vacuole organization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CORVET complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of HOPS complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of protein-containing complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Sec1/munc18-like (SM) proteins superfamily
    NP_001154679.1
    • ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1433 Blast hits to 1411 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 387; Plants - 135; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).
    NP_567009.1
    • ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1699 Blast hits to 1677 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 432; Plants - 184; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20324088..20330030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115343.4 → NP_567009.1  Sec1/munc18-like (SM) proteins superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567009.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94KJ7, Q9SV35
      UniProtKB/TrEMBL
      A0A178VEG6, A0A5S9XLL3, A0A654FIH7
      Conserved Domains (1) summary
      pfam00995
      Location:36 → 580
      Sec1; Sec1 family

    2. NM_001161207.1 → NP_001154679.1  Sec1/munc18-like (SM) proteins superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154679.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEG6, F4JE40
      Conserved Domains (1) summary
      pfam00995
      Location:36 → 596
      Sec1; Sec1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94KJ7.1

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