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    OFP12 ovate family protein 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837043, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OFP12
    Official Full Name
    ovate family protein 12
    Primary source
    TAIR:AT1G05420
    Locus tag
    AT1G05420
    See related
    Araport:AT1G05420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12; ATOFP12; ovate family protein 12; T25N20.7; T25N20_7
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    Genomic context

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    See OFP12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (1589973..1591012)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Asn Neighboring gene uncharacterized protein Neighboring gene CDPK adapter, putative (DUF1423) Neighboring gene uncharacterized protein Neighboring gene C-8 sterol isomerase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development. Wang S, et al. PLoS One, 2011. PMID 21886836, Free PMC Article
    2. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. Hackbusch J, et al. Proc Natl Acad Sci U S A, 2005 Mar 29. PMID 15781858, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100421.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ovate family protein 12
    NP_172033.1
    • ovate family protein 12 (OFP12); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1); Has 358 Blast hits to 358 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1589973..1591012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331548.1 → NP_001323411.1  ovate family protein 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWY8, A0A654E7A5
      Conserved Domains (1) summary
      cl04796
      Location:172 → 236
      Ovate; Transcriptional repressor, ovate

    2. NM_100421.2 → NP_172033.1  ovate family protein 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172033.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I8R6, Q9ZVZ6
      UniProtKB/TrEMBL
      A0A178WNG4, A0A654E7A5
      Conserved Domains (1) summary
      cl04796
      Location:156 → 220
      Ovate; Transcriptional repressor, ovate
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I8R6.1

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