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    Calcium-binding EF-hand family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830036, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-binding EF-hand family protein
    Primary source
    TAIR:AT4G38810
    Locus tag
    AT4G38810
    See related
    Araport:AT4G38810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A14.90; T9A14_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (18115283..18119160, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing-splicing factor-like protein Neighboring gene uncharacterized protein Neighboring gene ER lumen protein retaining receptor family protein Neighboring gene methylthioadenosine nucleosidase 1 Neighboring gene ncRNA Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two SnRK2-Interacting Calcium Sensor Isoforms Negatively Regulate SnRK2 Activity by Different Mechanisms. Tarnowski K, et al. Plant Physiol, 2020 Feb. PMID 31699848, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120041.4
    NM_179188.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase inhibitor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Calcium-binding EF-hand family protein
    NP_195592.1
    • Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28830.1); Has 314 Blast hits to 218 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_849519.1
    • Calcium-binding EF-hand family protein; BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28830.1); Has 178 Blast hits to 109 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18115283..18119160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120041.4 → NP_195592.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195592.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2T0, A0A7G2F3V9, Q9T0I9
      Conserved Domains (1) summary
      pfam13499
      Location:31 → 105
      EF-hand_7; EF-hand domain pair

    2. NM_179188.2 → NP_849519.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849519.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8L428
    Nucleotide Protein
    Heading Accession and Version

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