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    ribosome-binding factor A family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829625, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosome-binding factor A family protein
    Primary source
    TAIR:AT4G34730
    Locus tag
    AT4G34730
    See related
    Araport:AT4G34730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RBF1; RbfA domain-containing protein 1; T4L20.310; T4L20_310
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (16569368..16573955, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene GLN phosphoribosyl pyrophosphate amidotransferase 2 Neighboring gene SAUR-like auxin-responsive protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA. Fristedt R, et al. Plant Physiol, 2014 Jan. PMID 24214533, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At4g34730 acts in processing of the chloroplast 16S ribosomal RNA.At4g34730 has assumed an additional role in 3' end RNA processing.
      Title: RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001342300.1
    NM_001342301.1
    NM_119639.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within ribosome biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ribosome-binding factor A family protein
    NP_195199.2
    • ribosome-binding factor A family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome-binding factor A, conserved site (InterPro:IPR020053), K homology-like, alpha/beta (InterPro:IPR015946), Ribosome-binding factor A (InterPro:IPR000238); Has 4827 Blast hits to 4826 proteins in 1979 species: Archae - 0; Bacteria - 4129; Metazoa - 5; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16569368..16573955 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119639.3 → NP_195199.2  ribosome-binding factor A family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195199.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65693, Q8H0V9
      UniProtKB/TrEMBL
      A0A178UTL6, A0A5S9XYN6
      Conserved Domains (1) summary
      PRK00521
      Location:54 → 183
      rbfA; 30S ribosome-binding factor RbfA

    2. NM_001342300.1 → NP_001328511.1  ribosome-binding factor A family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65693, Q8H0V9
      UniProtKB/TrEMBL
      A0A178UTL6, A0A5S9XYN6
      Conserved Domains (1) summary
      PRK00521
      Location:54 → 183
      rbfA; 30S ribosome-binding factor RbfA

    3. NM_001342301.1 → NP_001328512.1  ribosome-binding factor A family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65693, Q8H0V9
      UniProtKB/TrEMBL
      A0A178UTL6, A0A5S9XYN6
      Conserved Domains (1) summary
      PRK00521
      Location:54 → 183
      rbfA; 30S ribosome-binding factor RbfA
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65693.2

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