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    Putative AT-hook DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828380, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative AT-hook DNA-binding family protein
    Primary source
    TAIR:AT4G22810
    Locus tag
    AT4G22810
    See related
    Araport:AT4G22810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL24; AT-hook motif nuclear localized protein 24; T12H17.200; T12H17_200
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (11983974..11986016)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene MATE efflux family protein Neighboring gene ncRNA Neighboring gene A20/AN1-like zinc finger family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118410.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative AT-hook DNA-binding family protein
    NP_194012.1
    • Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT4G12050.1); Has 813 Blast hits to 808 proteins in 45 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 2; Plants - 764; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11983974..11986016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118410.3 → NP_194012.1  Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194012.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49662, Q0WL85
      UniProtKB/TrEMBL
      A0A178V625, A0A5S9XVC1
      Conserved Domains (1) summary
      cd11378
      Location:133 → 219
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49662.1

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