U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NEP-interacting protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816537, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    NEP-interacting protein, putative (DUF239)
    Primary source
    TAIR:AT2G20170
    Locus tag
    AT2G20170
    See related
    Araport:AT2G20170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2G17.3; T2G17_3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (8701013..8704357)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein Neighboring gene phytochrome interacting factor 3-like 5 Neighboring gene CLIP-associated protein Neighboring gene RNI-like superfamily protein Neighboring gene low-molecular-weight cysteine-rich 60

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001124876.1
    NM_001202629.1
    NM_127576.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NEP-interacting protein, putative (DUF239)
    NP_001118348.1
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001189558.1
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23390.1).
    NP_179607.1
    • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23390.1); Has 729 Blast hits to 673 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 706; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8701013..8704357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127576.2 → NP_179607.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179607.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZU8, A0A654EUG9, Q9SL64
      Conserved Domains (2) summary
      pfam03080
      Location:172 → 395
      Neprosin
      pfam14365
      Location:50 → 159
      Neprosin_AP; Neprosin activation peptide

    2. NM_001124876.1 → NP_001118348.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118348.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZU8, A0A654EUG9, Q9SL64
      Conserved Domains (2) summary
      pfam03080
      Location:172 → 395
      Neprosin
      pfam14365
      Location:50 → 159
      Neprosin_AP; Neprosin activation peptide

    3. NM_001202629.1 → NP_001189558.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189558.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EUG9, F4IUF5
      Conserved Domains (2) summary
      pfam03080
      Location:172 → 378
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:50 → 159
      DUF4409; Domain of unknown function (DUF4409)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.