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    Replication factor-A protein 1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827651, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Replication factor-A protein 1-like protein
    Primary source
    TAIR:AT4G19130
    Locus tag
    AT4G19130
    See related
    Araport:AT4G19130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Replication Protein A 1E; RPA1E; T18B16.100; T18B16_100
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (10466407..10469329, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene PAM68-like protein (DUF3464) Neighboring gene Protein kinase superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene exopolysaccharide production negative regulator Neighboring gene Ankyrin repeat family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118032.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Replication factor-A protein 1-like protein
    NP_567576.2
    • Replication factor-A protein 1-related; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G45400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10466407..10469329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341326.1 → NP_001328660.1  Replication factor-A protein 1-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5B8, A0A7G2F5R2

    2. NM_118032.2 → NP_567576.2  Replication factor-A protein 1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567576.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JSG3, O49671
      UniProtKB/TrEMBL
      A0A7G2F5R2
      Conserved Domains (5) summary
      cd04474
      Location:230 → 331
      RPA1_DBD_A; RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
      TIGR00617
      Location:2 → 669
      rpa1; replication factor-a protein 1 (rpa1)
      pfam04057
      Location:5 → 107
      Rep-A_N; Replication factor-A protein 1, N-terminal domain
      pfam08646
      Location:512 → 663
      Rep_fac-A_C; Replication factor-A C terminal domain
      pfam16900
      Location:351 → 455
      REPA_OB_2; Replication protein A OB domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JSG3.1

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