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    smr (Small MutS Related) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835986, updated on 18-Sep-2024

    Summary

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    Official Full Name
    smr (Small MutS Related) domain-containing protein
    Primary source
    TAIR:AT5G58720
    Locus tag
    AT5G58720
    See related
    Araport:AT5G58720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MZN1.26; MZN1_26
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (23719695..23723175, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-speciwc phospholipase C5 Neighboring gene phosphatidylinositol-speciwc phospholipase C4 Neighboring gene rotamase CYP 7 Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene HSP20-like chaperones superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125987.1
    NM_001125988.1
    NM_125259.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    smr (Small MutS Related) domain-containing protein
    NP_001119459.1
    • smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119460.1
    • smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_200680.1
    • smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23719695..23723175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125259.4 → NP_200680.1  smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200680.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65573, Q8LEH8
      UniProtKB/TrEMBL
      A0A178UKM9, A0A5S9YFH1
      Conserved Domains (4) summary
      smart00463
      Location:427 → 501
      SMR; Small MutS-related domain
      COG1308
      Location:28 → 89
      EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
      pfam08590
      Location:358 → 419
      DUF1771; Domain of unknown function (DUF1771)
      cl21463
      Location:187 → 227
      UBA_like_SF; UBA domain-like superfamily

    2. NM_001125988.1 → NP_001119460.1  smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119460.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKM9, B3H5F6
      Conserved Domains (3) summary
      pfam08590
      Location:358 → 415
      DUF1771; Domain of unknown function (DUF1771)
      cl02619
      Location:427 → 479
      Smr; Smr domain
      cl21463
      Location:187 → 227
      UBA_like_SF; UBA domain-like superfamily

    3. NM_001125987.1 → NP_001119459.1  smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119459.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKM9, B3H7K1
      Conserved Domains (2) summary
      pfam08590
      Location:358 → 415
      DUF1771; Domain of unknown function (DUF1771)
      cl21463
      Location:187 → 227
      UBA_like_SF; UBA domain-like superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65573.1

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