U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    sa spermatocyte arrest [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40367, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    saprovided by FlyBase
    Official Full Name
    spermatocyte arrestprovided by FlyBase
    Primary source
    FLYBASE:FBgn0002842
    Locus tag
    Dmel_CG11308
    See related
    AllianceGenome:FB:FBgn0002842
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG11308; Dmel\CG11308; dTAF8L; gfb; ms(3)sa; ms(3)VO45; ms(3)VO5; Sa; TAF-like; TAF8L; tTAF
    Summary
    Involved in male meiosis I; regulation of gene expression; and spermatid differentiation. Located in male germ cell nucleus and nucleolus. Is expressed in spermatid and spermatocyte. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    78D1-78D1; 3-47 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (21405425..21406738, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (21398525..21399838, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene regeneration Neighboring gene long non-coding RNA:CR45953 Neighboring gene long non-coding RNA:CR45954 Neighboring gene barricade Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Polycomb, trithorax and the decision to differentiate. Ringrose L. Bioessays, 2006 Apr. PMID 16547954
    2. Rapid male-specific regulatory divergence and down regulation of spermatogenesis genes in Drosophila species hybrids. Ferguson J, et al. PLoS One, 2013. PMID 23593487, Free PMC Article
    3. Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis. Gan Q, et al. Genome Biol, 2010. PMID 20398323, Free PMC Article
    4. The piRNA pathway is developmentally regulated during spermatogenesis in Drosophila. Quénerch'du E, et al. RNA, 2016 Jul. PMID 27208314, Free PMC Article
    5. A trans-activator on the Drosophila Y chromosome regulates gene expression in the male germ line. Zhang P, et al. Genetica, 2000. PMID 11293789

    See all (84) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in male meiosis I IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in spermatid differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in male germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription factor TFIID complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    spermatocyte arrest
    Names
    CG11308-PA
    golfballs
    sa-PA
    spermatocytes arrest
    testis-specific TBP associated factor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      21405425..21406738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141054.3 → NP_649311.1  spermatocyte arrest [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649311.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4QQ22, Q9VP40
      Related
      FBpp0078055
      Conserved Domains (2) summary
      cd08049
      Location:125 → 177
      TAF8; TATA Binding Protein (TBP) Associated Factor 8
      pfam07524
      Location:6 → 77
      Bromo_TP; Bromodomain associated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VP40 Q9VP40

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools