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    SNL6 paired amphipathic helix Sin3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837584, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SNL6
    Official Full Name
    paired amphipathic helix Sin3-like protein
    Primary source
    TAIR:AT1G10450
    Locus tag
    AT1G10450
    See related
    Araport:AT1G10450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SIN3-like 6; T10O24.5; T10O24_5
    Summary
    Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).
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    Genomic context

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    See SNL6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Sequence:
    Chromosome: 1; NC_003070.9 (3431764..3438370)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2A-2 Neighboring gene tRNA-Pro Neighboring gene B3 DNA-binding domain protein Neighboring gene germin-like protein 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331907.1
    NM_100919.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of Sin3-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    paired amphipathic helix Sin3-like protein
    NP_172515.2
    • SIN3-like 6 (SNL6); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 5 (TAIR:AT1G59890.1); Has 2418 Blast hits to 1013 proteins in 213 species: Archae - 0; Bacteria - 30; Metazoa - 894; Fungi - 728; Plants - 479; Viruses - 2; Other Eukaryotes - 285 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3431764..3438370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331906.1 → NP_001321764.1  paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJA6, A0A1P8ARW9, A0A384LLL4, A0A5S9TNT5, A0A654E8P9
      Conserved Domains (1) summary
      COG5602
      Location:8 → 1083
      Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

    2. NM_100919.5 → NP_172515.2  paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172515.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJA6, A0A1P8ARW9, A0A384LLL4, A0A5S9TNT5, A0A654E8P9
      Conserved Domains (1) summary
      COG5602
      Location:8 → 1083
      Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

    3. NM_001331907.1 → NP_001321765.1  paired amphipathic helix Sin3-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I4C3, Q9XIK6
      UniProtKB/TrEMBL
      A0A5S9TNT5, A0A654E8P9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XIK6.2

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