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    EX2 UvrB/UvrC domain protein (DUF3506) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839642, updated on 18-Sep-2024

    Summary

    Official Symbol
    EX2
    Official Full Name
    UvrB/UvrC domain protein (DUF3506)
    Primary source
    TAIR:AT1G27510
    Locus tag
    AT1G27510
    See related
    Araport:AT1G27510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EXECUTER 2
    Summary
    Encodes one of the two plastid proteins EXECUTER (EX1, AT4G33630) and EX2 (AT1G27510). Mediates singlet oxygen induced programmed cell death.
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    Genomic context

    See EX2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (9554710..9558461, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Glycosyl hydrolase family 47 protein Neighboring gene ubiquitin-fold modifier-conjugating enzyme

    Bibliography

    General gene information

    NM_102515.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding  
    Component Evidence Code Pubs
    located_in chloroplast  
    located_in thylakoid  
    located_in thylakoid membrane PubMed 

    General protein information

    Preferred Names
    UvrB/UvrC domain protein (DUF3506)
    NP_564287.1
    • FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9554710..9558461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102515.3 → NP_564287.1  UvrB/UvrC domain protein (DUF3506) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564287.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AT5, Q9SXD0
      UniProtKB/TrEMBL
      A0A178WE62, A0A5S9W2X9, A0A654EIH8
      Conserved Domains (2) summary
      pfam02151
      Location:103 → 134
      UVR; UvrB/uvrC motif
      pfam12014
      Location:485 → 616
      DUF3506; Domain of unknown function (DUF3506)
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