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    IQD29 IQ-domain 29 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814808, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD29
    Official Full Name
    IQ-domain 29
    Primary source
    TAIR:AT2G02790
    Locus tag
    AT2G02790
    See related
    Araport:AT2G02790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IQ-domain 29; T20F6.7; T20F6_7
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    See IQD29 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (787885..791289)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene protein kinase 2B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126334.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IQ-domain 29
    NP_178382.2
    • IQ-domain 29 (IQD29); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 28 (TAIR:AT1G14380.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      787885..791289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335144.1 → NP_001324495.1  IQ-domain 29 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B0B7, O64504, Q56Y97
      UniProtKB/TrEMBL
      A0A178VP82, A0A5S9WWQ5
      Conserved Domains (3) summary
      PTZ00121
      Location:96 → 486
      PTZ00121; MAEBL; Provisional
      PRK05901
      Location:292 → 492
      PRK05901; RNA polymerase sigma factor; Provisional
      pfam13178
      Location:509 → 576
      DUF4005; Protein of unknown function (DUF4005)

    2. NM_001335145.1 → NP_001324494.1  IQ-domain 29 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B0B7, O64504, Q56Y97
      UniProtKB/TrEMBL
      A0A178VP82, A0A5S9WWQ5
      Conserved Domains (3) summary
      PTZ00121
      Location:96 → 486
      PTZ00121; MAEBL; Provisional
      PRK05901
      Location:292 → 492
      PRK05901; RNA polymerase sigma factor; Provisional
      pfam13178
      Location:509 → 576
      DUF4005; Protein of unknown function (DUF4005)

    3. NM_126334.3 → NP_178382.2  IQ-domain 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178382.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VP82, A0A5S9WWQ5, F4IRA9
      Conserved Domains (1) summary
      pfam13178
      Location:503 → 571
      DUF4005; Protein of unknown function (DUF4005)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8B0B7.1

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